PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.5KG146500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 210aa    MW: 21975 Da    PI: 8.9687
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.5KG146500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.97.3e-083598655
                         HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-.STCHHHHHHHHHHHHHHH CS
                  HLH  6 nerErrRRdriNsafeeLrellPk.as............kapskK.lsKaeiLekAveYIksLq 55
                         + +E++RR +++    +L +l+P+ a+            ++p+k   +  + L  A  YIk+L+
  Pavir.5KG146500.1.p 35 KDVEKNRRLHMKGLCLKLSSLIPPaACrasllseaaasaSNPNKDaATQLDQLDTAAAYIKQLK 98
                         689*********************666************8888888****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.0E-1033109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-834109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-43597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGC KLERKDVEKN RRLHMKGLCL KLSSLIPPAA  60
CRASLLSEAA ASASNPNKDA ATQLDQLDTA AAYIKQLKER IDALKRRKED GGGRAATAGS  120
GAVRMPVVEV RCQDGATLDV VLISEAGRPF KLHEVITALE EEGAEVVSAS FSVVGDKIFY  180
TIHSQALSPR IGLDAARVSE RLHDLLLLA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.3220.0callus| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0388185e-81BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBankKJ7268685e-81KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.11e-111PREDICTED: uncharacterized protein LOC101784195
TrEMBLK3XLS41e-111K3XLS4_SETIT; Uncharacterized protein
STRINGSi002847m1e-110(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.12e-18bHLH family protein