PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.5KG146500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 210aa MW: 21975 Da PI: 8.9687

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.5KG146500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.9	7.3e-08	35	98	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...............TTS-.STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.as............kapskK.lsKaeiLekAveYIksLq 55 + +E++RR +++ +L +l+P+ a+ ++p+k + + L A YIk+L+ Pavir.5KG146500.1.p 35 KDVEKNRRLHMKGLCLKLSSLIPPaACrasllseaaasaSNPNKDaATQLDQLDTAAAYIKQLK 98 689*******************666********8888888**************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.0E-10	33	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-8	34	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-4	35	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MKSRRQSSGG SSAGATAAGE GNTHSSGGGC KLERKDVEKN RRLHMKGLCL KLSSLIPPAA 60 CRASLLSEAA ASASNPNKDA ATQLDQLDTA AAYIKQLKER IDALKRRKED GGGRAATAGS 120 GAVRMPVVEV RCQDGATLDV VLISEAGRPF KLHEVITALE EEGAEVVSAS FSVVGDKIFY 180 TIHSQALSPR IGLDAARVSE RLHDLLLLA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.322	0.0	callus\| stem

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038818	5e-81	BT038818.1 Zea mays full-length cDNA clone ZM_BFb0332C18 mRNA, complete cds.
GenBank	KJ726868	5e-81	KJ726868.1 Zea mays clone pUT3409 bHLH transcription factor (bHLH76) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967963.1	1e-111	PREDICTED: uncharacterized protein LOC101784195
TrEMBL	K3XLS4	1e-111	K3XLS4_SETIT; Uncharacterized protein
STRING	Si002847m	1e-110	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP829	36	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10585.1	2e-18	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pavir.5KG146500.1.p